Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs497908 chr13:37512624 G/A 0.00037 177 6.37 24.47 25.7 KM Plot
PCPG rs4992515 chr16:8763235 A/C 0 178 25.47 23.53 3.17 KM Plot
PCPG rs5011845 chr8:11305322 C/T 8.04E-6 178 25.53 22.63 14.15 KM Plot
PCPG rs5020720 chr5:13803158 A/C 0.000478 178 28.47 18.7 24.33 KM Plot
PCPG rs5025124 chr8:135494243 C/T 0.000457 178 25.4 24.7 28.95 KM Plot
PCPG rs523628 chr3:53505928 G/A 0.00026 170 31.43 22.35 25.6 KM Plot
PCPG rs534622 chr3:80681027 C/T 0.000182 176 19.53 24.5 27.2 KM Plot
PCPG rs551315 chr3:80683010 A/G 0.000181 176 19.53 24.5 27.2 KM Plot
PCPG rs55649270 chr20:10637337 T/G 0.000181 175 24.52 29.43 14.28 KM Plot
PCPG rs55650580 chr2:241526259 T/A 3.68E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs55653896 chr16:89578057 C/T 0.000325 174 26.78 25.4 19.87 KM Plot
PCPG rs55670239 chr13:54165284 G/T 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs55671732 chr16:85227077 G/GT 1.76E-7 171 25.92 23.43 17.43 KM Plot
PCPG rs55683052 chr17:80527445 T/C 8.78E-7 175 25.53 24.53 8.75 KM Plot
PCPG rs55691539 chr7:105165774 T/C 5.73E-5 176 20.17 30.45 2.28 KM Plot